miRNA predicted target search

Species Select your specie of interest
Identifiers *miRNA putative targets can be searched by providing Stem loop or Mature Sequence IDs or by their names
For eg. MI0000290 or MIMAT0000231 or miR-30a or hsa-mir-34a

Upload a file OR Choose from a File (example list)

Gene Region

Promoter Upstream flanked Upstream flanking region (assumed promoter) Max. 10kb is allowed
5' UTR CDS 3'UTR Restrict your search of miRNA binding sites within specific region(s)

Options

Transcript All Longest Select either all or the longest transcript of gene(s)
Min Seed Length Minimum number of nucleotides of miRNA seqence through which they can make one or more interactios with their possible targets
pValue A probability distribution of random matches of a subsequence in the given sequence

Comparative analysis by 8 prediction programs

DIANA-mT miRanda miRDB miRWalk RNAhybrid
PICTAR4 PICTAR5 PITA RNA22 TargetScan