Predicted gene-miRNA interaction search

Species Select your specie of interest
Identifiers Enter GeneSymbols OR EntrezIDs

Upload a file OR Choose from a File (example list)

Gene Region

Promoter Upstream flanked Upstream flanking region (assumed promoter) Max. 10kb is allowed
5' UTR CDS 3'UTR Restrict your search of miRNA binding sites within specific region(s)

Options

Transcript All Longest Select either all or the longest transcript of gene(s)
Min Seed Length Minimum number of nucleotides of miRNA seqence through which they can make one or more interactios with their possible targets
pValue A probability distribution of random matches of a subsequence in the given sequence

Comparative analysis by 8 prediction programs

DIANA-mT miRanda miRDB miRWalk RNAhybrid
PICTAR4 PICTAR5 PITA RNA22 TargetScan