| NCBI Homo sapiens |
RNA sequences |
NCBI Homo sapiens Release 110. GRCh38.p14 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9606/110/GCF_000001405.40_GRCh38. |
| miRBase |
miRNA sequences |
Release 22.1 |
http://www.mirbase.org/ftp.shtml |
| TargetScan |
predicted miRNA Targets |
Release 7.2 conserved sites only |
http://www.targetscan.org/ |
| miRDB |
predicted miRNA Targets |
Release 6.0: 2019/05 |
http://www.mirdb.org/miRDB/download.html |
| miRTarBase |
validated miRNA Targets |
Release 9.0 |
https://mirtarbase.cuhk.edu.cn/~miRTarBase/miRTarBase_2022/php/index.php |
| TarPmiR |
prediction tool |
Release 02/15/2017 |
http://hulab.ucf.edu/research/projects/miRNA/TarPmiR/ |
| KEGG Pathways |
GSEA Genesets |
09/03/2023 |
http://www.genome.jp/kegg/ |
| Reactome Pathways |
GSEA Genesets |
06/2023 |
http://www.reactome.org |
| NCBI Mus musculus |
RNA sequences |
NCBI Annotation Release 109 GRCm39 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/10090/109/GCF_000001635.27_GRCm39 |
| NCBI Rattus norvegicus |
RNA sequences |
NCBI Annotation Release 108 mRatBN7.2 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/10116/108/GCF_015227675.2_mRatBN7 |
| NCBI Canis familiaris |
RNA sequences |
NCBI Annotation Release 106 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9615/106/GCF_014441545.1_ROS_Cfam |
| NCBI Bos taurus |
RNA sequences |
NCBI Annotation Release 106 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/9913/106/GCF_002263795.1_ARS-UCD1 |
| Gene Ontology |
Genesets |
06/2023 |
http://geneontology.org/ |
| Danio rerio |
RNA sequences |
NCBI Danio rerio Annotation Release 106, GRCz11 |
ftp://ftp.ncbi.nlm.nih.gov/genomes/all/annotation_releases/7955/106/GCF_000002035.6_GRCz11/ |
| Disease Annotation |
Genesets |
Version 6.0.0 |
https://www.alliancegenome.org/downloads |
