Resources


Resources for miRNA-target data

Source Stype Release Link
NCBI Homo sapiens RNA sequences NCBI Homo sapiens Annotation Release 109.
miRBase miRNA sequences Release 22
TargetScan predicted miRNA Targets Release 8.0: 2019/09
miRDB predicted miRNA Targets Release 6.0: 2019/05
miRTarBase validated miRNA Targets Release 8.0: 2019/09/15
TarPmiR prediction tool Release 02/15/2017
KEGG Pathways GSEA Genesets 01/03/2020
Reactome Pathways GSEA Genesets 10/2021
NCBI Mus musculus RNA sequences NCBI Annotation Release 109
NCBI Rattus norvegicus RNA sequences NCBI Annotation Release 108
NCBI Canis familiaris RNA sequences NCBI Annotation Release 106
NCBI Bos taurus RNA sequences NCBI Annotation Release 106
Gene Ontology Genesets 10/2021
Danio rerio RNA sequences NCBI Danio rerio Annotation Release 106, GRCz11
Disease Annotation Genesets Version 4.1.0

Statistics

Species miRNA Genes Transcripts Interactions Validated Entries
human 2656 19514 45555 111681947 1025345
mouse 1978 22173 35417 69936345 82097
rat 764 22216 28071 17456354 744
cow 1030 21027 23417 17727228 232
dog 453 20949 23574 8412314 0
fish 374 26437 25325 5590406 133



Download files for miRNA-Target interactions in different species:

Files are compressed with 7zip.
Human
5UTR CDS 3UTR
Mouse
5UTR CDS 3UTR
Rat
5UTR CDS 3UTR
Cow
5UTR CDS 3UTR
Dog
5UTR CDS 3UTR
Zebrafish
5UTR CDS 3UTR