Resources


Resources for miRNA-target data

Source Stype Release Link
NCBI Homo sapiens RNA sequences NCBI Homo sapiens Annotation Release 109.
miRBase miRNA sequences Release 22
TargetScan predicted miRNA Targets Release 7.2: March 2018
miRDB predicted miRNA Targets Release 5.0
miRTarBase validated miRNA Targets Release 7.0: Sept. 15, 2017
TarPmiR prediction tool Release 02/15/2017
KEGG Pathways GSEA Genesets 01/03/2020
Reactome Pathways GSEA Genesets 1/03/2020
NCBI Mus musculus RNA sequences NCBI Annotation Release 106, Assembly GRCm38.p6
NCBI Rattus norvegicus RNA sequences NCBI Annotation Release 106, Assembly Rnor_6.0
NCBI Canis familiaris RNA sequences NCBI Annotation Release 105, Assembly CanFam3.1
NCBI Bos taurus RNA sequences NCBI Annotation Release 105, Assembly Bt_UMD_3.1
Gene Ontology Genesets 01/03/2020
Danio rerio RNA sequences NCBI Danio rerio Annotation Release 106, GRCz11

Statistics

Species miRNA Genes Transcripts Interactions Validated Entries
fish 374 26437 25325 6067803 139
human 2656 19722 44616 111653622 1011013
mouse 1978 22173 31932 65900301 75968
rat 764 22863 22060 13805939 626
cow 1030 21027 23421 18950127 241
dog 453 19871 21788 8539489 0



Download files for miRNA-Target interactions in different species:

Files are compressed with 7zip.
Human
5UTR CDS 3UTR
Mouse
5UTR CDS 3UTR
Rat
5UTR CDS 3UTR
Cow
5UTR CDS 3UTR
Dog
5UTR CDS 3UTR
Zebrafish
5UTR CDS 3UTR